Sample data

For real studies, upload your own dataset files. The examples below show the minimal set of columns each analysis needs, to help you check your export matches before uploading.

Minimal composition rows

[
  {"cell_type": "CD8 T cell", "group": "case"},
  {"cell_type": "CD8 T cell", "group": "case"},
  {"cell_type": "B cell", "group": "control"}
]

Minimal repertoire rows

[
  {"sample_id": "s1", "barcode": "c1", "chain": "TRB", "cdr3": "CASSA", "v_gene": "TRBV1", "j_gene": "TRBJ1"},
  {"sample_id": "s2", "barcode": "c2", "chain": "TRB", "cdr3": "CASSA", "v_gene": "TRBV1", "j_gene": "TRBJ1"}
]

Minimal communication rows

Expression:

[
  {"cell_id": "t1", "IFNG": 6, "CXCR3": 2},
  {"cell_id": "m1", "CXCL9": 4, "IFNGR1": 5}
]

Metadata:

[
  {"cell_id": "t1", "cell_type": "T cell", "condition": "case"},
  {"cell_id": "m1", "cell_type": "Myeloid", "condition": "case"}
]