All research areas

Immune cell states, signaling networks, and repertoire dynamics

Immunology

The Immunology area is a research workspace for immune-system datasets and translational immunology studies. Build on computational-biology single-cell and spatial workflows, add immune-specific annotation and state scoring, organize disease cohorts, and prepare for repertoire, cytokine, and communication analyses with reproducible run records.

Capabilities

Platform features

Everything available in the Immunology workspace today — pipelines, explorers, exports, and provenance.

  • Study containers for autoimmune, infectious disease, vaccine, allergy, and immunotherapy research
  • Immune cell annotation and fine-grained immune hierarchy workflows
  • Immune state scoring for exhaustion, activation, effector function, cytotoxicity, and regulatory suppression
  • CITE-seq, VDJ, spatial, ATAC, FCS, cytokine, bulk RNA-seq, and single-cell dataset metadata
  • Disease context and cohort metadata for timepoints, medication, vaccination, infection history, and response labels
  • Canonical home for immune repertoire analysis shared with oncology workflows
  • Canonical home for immune cell-cell communication and cytokine network methods shared with oncology
  • Run history for immune analysis parameters, artifacts, model versions, and reproducible outputs
  • Grounded analytical interpretation for immune cell states, signaling, repertoire, and disease context